[ 源代码： discosnp ]
软件包：discosnp（1:2.6.2-3 以及其他的）
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
其他与 discosnp 有关的软件包
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2+dfsg)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: zlib1g (>= 1:1.2.6)
- 压缩库 - 运行时