[ 源代码： nanopolish ]
软件包：nanopolish（0.14.0-1 以及其他的）
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
其他与 nanopolish 有关的软件包
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [除 armel, armhf, ppc64el]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
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- dep: perl
- 拉里 沃尔的实用报表提取语言(Perl)
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: zlib1g (>= 1:1.1.4) [除 armel, armhf]
- 压缩库 - 运行时
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
下载 nanopolish
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| amd64 | 0.14.0-1+b1 | 2,144.8 kB | 9,343.0 kB | [文件列表] |
| arm64 | 0.14.0-1+b1 | 2,073.9 kB | 9,219.0 kB | [文件列表] |
| armel | 0.14.0-1+b1 | 2,078.6 kB | 9,253.0 kB | [文件列表] |
| armhf | 0.14.0-1+b1 | 2,085.1 kB | 8,861.0 kB | [文件列表] |
| i386 | 0.14.0-1+b1 | 2,167.9 kB | 9,413.0 kB | [文件列表] |
| mips64el | 0.14.0-1+b1 | 2,105.4 kB | 9,592.0 kB | [文件列表] |
| ppc64el | 0.14.0-1+b1 | 2,149.2 kB | 9,603.0 kB | [文件列表] |