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[ 源代码: cufflinks  ]

软件包:cufflinks(2.2.1+dfsg.1-9 以及其他的) [non-free]

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Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c++, 角色: 程序, 处理: Biological Sequence

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下载 cufflinks

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
amd64 2.2.1+dfsg.1-9+b1 1,515.8 kB10,573.0 kB [文件列表]
arm64 2.2.1+dfsg.1-9+b1 1,406.4 kB10,471.0 kB [文件列表]
armel 2.2.1+dfsg.1-9+b1 1,246.6 kB9,506.0 kB [文件列表]
armhf 2.2.1+dfsg.1-9+b1 1,138.5 kB6,422.0 kB [文件列表]
i386 2.2.1+dfsg.1-9+b1 1,538.5 kB10,692.0 kB [文件列表]
mips64el 2.2.1+dfsg.1-9+b1 1,559.0 kB15,287.0 kB [文件列表]
ppc64el 2.2.1+dfsg.1-9+b1 1,519.6 kB13,479.0 kB [文件列表]
s390x 2.2.1+dfsg.1-9+b1 1,464.1 kB11,663.0 kB [文件列表]