[ 源代码： gubbins ]
软件包：gubbins（3.3.5-1 以及其他的）
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
其他与 gubbins 有关的软件包
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- dep: fasttree [除 amd64, i386]
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.27) [riscv64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
- dep: libc6 (>= 2.29) [m68k, ppc64]
- dep: libc6 (>= 2.34) [amd64, i386]
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- dep: libc6.1 (>= 2.29) [alpha]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-multiprocess [amd64, i386]
- better multiprocessing and multithreading in Python
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- dep: python3-nose [除 amd64, i386]
- test discovery and running for Python3 unittest
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- dep: python3-numpy [amd64, i386]
- Fast array facility to the Python language (Python 3)
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- dep: python3-reportlab [除 amd64, i386]
- ReportLab library to create PDF documents using Python3
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- dep: python3-scipy [amd64, i386]
- scientific tools for Python 3
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- rec: iqtree
- efficient phylogenetic software by maximum likelihood
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- sug: r-base-core
- GNU R core of statistical computation and graphics system
下载 gubbins
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 2.3.5-1 | 53.5 kB | 201.0 kB | [文件列表] |
| amd64 | 3.3.5-1 | 89.7 kB | 473.0 kB | [文件列表] |
| i386 | 3.3.5-1 | 90.7 kB | 476.0 kB | [文件列表] |
| m68k （非官方移植版） | 2.3.5-1 | 46.0 kB | 174.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 2.3.5-1 | 55.4 kB | 312.0 kB | [文件列表] |
| riscv64 （非官方移植版） | 2.3.5-1 | 48.1 kB | 168.0 kB | [文件列表] |