软件包：r-bioc-scran（1.30.2+dfsg-1 以及其他的）

r-bioc-scran 的相关链接

Debian 的资源：

下载源码包 r-bioc-scran：

维护小组：

外部的资源：

主页 [bioconductor.org]

相似软件包：

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

其他与 r-bioc-scran 有关的软件包

依赖

推荐

建议

增强

dep: libblas3 [sparc64]

Basic Linear Algebra Reference implementations, shared library

或者 libblas.so.3

本虚包由这些包填实： libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libc6 (>= 2.27) [riscv64]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb

dep: libc6 (>= 2.29) [除 alpha, ia64, riscv64, sh4]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.29) [alpha]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

GCC 支持库

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC 支持库
dep: libgfortran5 (>= 8) [sparc64]

Runtime library for GNU Fortran applications
dep: liblapack3

Library of linear algebra routines 3 - shared version

或者 liblapack.so.3

本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc++6 (>= 11) [x32]

GNU 标准 C++ 库，第3版

dep: libstdc++6 (>= 13.1) [除 x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

本虚包由这些包填实： r-base-core
dep: r-api-bioc-3.16 [x32]

软件包暂时不可用
dep: r-api-bioc-3.18 [除 x32]

本虚包由这些包填实： r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-2) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat

I/O for several formats storing matrix data
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages
dep: r-bioc-bluster

Clustering Algorithms for Bioconductor
dep: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
dep: r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: r-bioc-edger

Empirical analysis of digital gene expression data in R
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-metapod

GNU R meta-analyses on P-Values of differential analyses
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities
dep: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-bh

(Virtual) GNU R package to provide BH
dep: r-cran-dqrng

GNU R fast pseudo random number generators
dep: r-cran-igraph

GNU R network analysis and visualization
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C++ Integration
dep: r-cran-statmod

GNU R package providing algorithms and functions for statistical modeling

sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-hdf5array

HDF5 backend for DelayedArray objects
sug: r-bioc-monocle

clustering, differential expression, and trajectory analysis for RNA-Seq
sug: r-bioc-residualmatrix

Creating a DelayedMatrix of Regression Residuals
sug: r-bioc-scaledmatrix

creating a DelayedMatrix of scaled and centered values using GNU R
sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-bioc-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets
sug: r-cran-dynamictreecut

Methods for Detection of Clusters in Hierarchical Clustering
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-pheatmap

GNU R package to create pretty heatmaps
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

下载 r-bioc-scran

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.30.2+dfsg-1	959.5 kB	1,476.0 kB	[文件列表]
amd64	1.30.2+dfsg-1	967.8 kB	1,377.0 kB	[文件列表]
arm64	1.30.2+dfsg-1	953.4 kB	1,413.0 kB	[文件列表]
armel	1.30.2+dfsg-1	951.9 kB	1,323.0 kB	[文件列表]
armhf	1.30.2+dfsg-1	953.4 kB	1,251.0 kB	[文件列表]
hppa （非官方移植版）	1.30.2+dfsg-1	968.1 kB	1,429.0 kB	[文件列表]
i386	1.30.2+dfsg-1	973.2 kB	1,379.0 kB	[文件列表]
ia64 （非官方移植版）	1.30.2+dfsg-1	985.8 kB	1,683.0 kB	[文件列表]
mips64el	1.30.2+dfsg-1	950.4 kB	1,516.0 kB	[文件列表]
ppc64 （非官方移植版）	1.30.2+dfsg-1	968.0 kB	1,544.0 kB	[文件列表]
ppc64el	1.30.2+dfsg-1	965.6 kB	1,477.0 kB	[文件列表]
riscv64	1.30.2+dfsg-1	966.8 kB	1,312.0 kB	[文件列表]
s390x	1.30.2+dfsg-1	971.3 kB	1,400.0 kB	[文件列表]
sh4 （非官方移植版）	1.30.2+dfsg-1	987.2 kB	1,410.0 kB	[文件列表]
sparc64 （非官方移植版）	1.30.2+dfsg-1	946.3 kB	2,059.0 kB	[文件列表]
x32 （非官方移植版）	1.26.2+dfsg-1	964.7 kB	1,342.0 kB	[文件列表]