Paket: r-bioc-scran (1.30.2+dfsg-1 och andra)

Länkar för r-bioc-scran

Debianresurser:

Hämta källkodspaketet r-bioc-scran:

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Externa resurser:

Hemsida [bioconductor.org]

Liknande paket:

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Andra paket besläktade med r-bioc-scran

beror

rekommenderar

föreslår

enhances

dep: libblas3 [sparc64]

Basic Linear Algebra Reference implementations, shared library

eller libblas.so.3

virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libc6 (>= 2.27) [riscv64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.29) [ej alpha, ia64, riscv64, sh4]

dep: libc6 (>= 2.37) [sh4]
dep: libc6.1 (>= 2.29) [alpha]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

GCC stödbibliotek

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC stödbibliotek
dep: libgfortran5 (>= 8) [sparc64]

Runtime library for GNU Fortran applications
dep: liblapack3

Library of linear algebra routines 3 - shared version

eller liblapack.so.3

virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libstdc++6 (>= 11) [x32]

GNU standardbibliotek v3 för C++

dep: libstdc++6 (>= 13.1) [ej x32]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-4.0

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.16 [x32]

Paketet inte tillgängligt
dep: r-api-bioc-3.18 [ej x32]

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-2) [x32]

GNU R core of statistical computation and graphics system
dep: r-bioc-beachmat

I/O for several formats storing matrix data
dep: r-bioc-biocgenerics

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biocsingular

Singular Value Decomposition for Bioconductor Packages
dep: r-bioc-bluster

Clustering Algorithms for Bioconductor
dep: r-bioc-delayedarray

BioConductor delayed operations on array-like objects
dep: r-bioc-delayedmatrixstats

Functions on Rows and Columns of 'DelayedMatrix' Objects
dep: r-bioc-edger

Empirical analysis of digital gene expression data in R
dep: r-bioc-limma

linear models for microarray data
dep: r-bioc-metapod

GNU R meta-analyses on P-Values of differential analyses
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-scuttle

BioConductor single-cell RNA-Seq analysis utilities
dep: r-bioc-singlecellexperiment

S4 Classes for Single Cell Data
dep: r-bioc-summarizedexperiment

BioConductor assay container
dep: r-cran-bh

(Virtual) GNU R package to provide BH
dep: r-cran-dqrng

GNU R fast pseudo random number generators
dep: r-cran-igraph

GNU R network analysis and visualization
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-rcpp

GNU R package for Seamless R and C++ Integration
dep: r-cran-statmod

GNU R package providing algorithms and functions for statistical modeling

sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-hdf5array

HDF5 backend for DelayedArray objects
sug: r-bioc-monocle

clustering, differential expression, and trajectory analysis for RNA-Seq
sug: r-bioc-residualmatrix

Creating a DelayedMatrix of Regression Residuals
sug: r-bioc-scaledmatrix

creating a DelayedMatrix of scaled and centered values using GNU R
sug: r-bioc-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R
sug: r-bioc-scrnaseq

Collection of Public Single-Cell RNA-Seq Datasets
sug: r-cran-dynamictreecut

Methods for Detection of Clusters in Hierarchical Clustering
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-pheatmap

GNU R package to create pretty heatmaps
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Hämta r-bioc-scran

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.30.2+dfsg-1	959,5 kbyte	1.476,0 kbyte	[filförteckning]
amd64	1.30.2+dfsg-1	967,8 kbyte	1.377,0 kbyte	[filförteckning]
arm64	1.30.2+dfsg-1	953,4 kbyte	1.413,0 kbyte	[filförteckning]
armel	1.30.2+dfsg-1	951,9 kbyte	1.323,0 kbyte	[filförteckning]
armhf	1.30.2+dfsg-1	953,4 kbyte	1.251,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.30.2+dfsg-1	968,1 kbyte	1.429,0 kbyte	[filförteckning]
i386	1.30.2+dfsg-1	973,2 kbyte	1.379,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.30.2+dfsg-1	985,8 kbyte	1.683,0 kbyte	[filförteckning]
mips64el	1.30.2+dfsg-1	950,4 kbyte	1.516,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.30.2+dfsg-1	968,0 kbyte	1.544,0 kbyte	[filförteckning]
ppc64el	1.30.2+dfsg-1	965,6 kbyte	1.477,0 kbyte	[filförteckning]
riscv64	1.30.2+dfsg-1	966,8 kbyte	1.312,0 kbyte	[filförteckning]
s390x	1.30.2+dfsg-1	971,3 kbyte	1.400,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.30.2+dfsg-1	987,2 kbyte	1.410,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.30.2+dfsg-1	946,3 kbyte	2.059,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.26.2+dfsg-1	964,7 kbyte	1.342,0 kbyte	[filförteckning]