[ 源代码： flye ]
软件包：flye（2.9.4+dfsg-1 以及其他的）
de novo assembler for single molecule sequencing reads using repeat graphs
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
其他与 flye 有关的软件包
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- dep: libc6 (>= 2.38) [除 alpha, ia64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [除 alpha, ia64, riscv64]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-six
- Python 2 and 3 compatibility library
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
下载 flye
| 硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
|---|---|---|---|---|
| alpha （非官方移植版） | 2.9.4+dfsg-1 | 22,591.3 kB | 37,052.0 kB | [文件列表] |
| amd64 | 2.9.4+dfsg-1 | 22,637.6 kB | 36,914.0 kB | [文件列表] |
| arm64 | 2.9.4+dfsg-1 | 22,558.7 kB | 36,729.0 kB | [文件列表] |
| ia64 （非官方移植版） | 2.9.3+dfsg2-1 | 22,763.6 kB | 38,428.0 kB | [文件列表] |
| mips64el | 2.9.4+dfsg-1 | 22,557.9 kB | 37,104.0 kB | [文件列表] |
| ppc64 （非官方移植版） | 2.9.4+dfsg-1 | 22,628.7 kB | 37,242.0 kB | [文件列表] |
| ppc64el | 2.9.4+dfsg-1 | 22,638.1 kB | 37,177.0 kB | [文件列表] |
| riscv64 | 2.9.4+dfsg-1 | 22,616.0 kB | 36,509.0 kB | [文件列表] |
| s390x | 2.9.4+dfsg-1 | 22,668.1 kB | 37,097.0 kB | [文件列表] |