全部搜索项
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码: ecopcr  ]

软件包:ecopcr(1.0.1+dfsg-2)

ecopcr 的相关链接

Screenshot

Debian 的资源:

下载源码包 ecopcr

维护小组:

外部的资源:

相似软件包:

estimate PCR barcode primers quality

DNA barcoding is a tool for characterizing the species origin using a short sequence from a standard position and agreed upon position in the genome. To be used as a DNA barcode, a genome locus should vary among individuals of the same species only to a minor degree and it should vary among species very quickly. From a practical point of view, a barcode locus should be flanked by two conserved regions to design PCR primers. Several manually discovered barcode loci like COI, rbcL, 18S, 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective function has been described to measure their quality in terms of universality (barcode coverage, Bc ) or in terms of taxonomical discrimination capacity (barcode specificity, Bs ).

ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality. In conjunction with OBITools you can postprocess ecoPCR output to compute barcode coverage and barcode specificity. New barcode primers can be developed using the ecoPrimers software

其他与 ecopcr 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 ecopcr

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 55.2 kB234.0 kB [文件列表]
arm64 54.8 kB222.0 kB [文件列表]
armel 52.2 kB206.0 kB [文件列表]
armhf 50.4 kB178.0 kB [文件列表]
i386 55.7 kB234.0 kB [文件列表]
mips64el 55.1 kB243.0 kB [文件列表]
mipsel 54.8 kB228.0 kB [文件列表]
ppc64el 58.8 kB354.0 kB [文件列表]
s390x 52.7 kB230.0 kB [文件列表]