[ 源代码： hinge ]
软件包：hinge（0.5.0-7 以及其他的）
long read genome assembler based on hinging
HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.
其他与 hinge 有关的软件包
|
|
|
|
-
- dep: daligner
- local alignment discovery between long nucleotide sequencing reads
-
- dep: dascrubber
- alignment-based scrubbing pipeline for DNA sequencing reads
-
- dep: dazzdb
- manage nucleotide sequencing read data
-
- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
-
- dep: libfmt9 (>= 9.0.0+ds1)
- fast type-safe C++ formatting library -- library
-
- dep: libgcc-s1 (>= 3.0)
- GCC 支持库
-
- dep: libgomp1 (>= 4.2.1)
- GCC OpenMP（GOMP）支持库
-
- dep: libstdc++6 (>= 11)
- GNU 标准 C++ 库，第3版
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-colormap
- ease manipulation of matplotlib colormaps and color codecs (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
-
- dep: python3-numpy
- Fast array facility to the Python 3 language
-
- dep: python3-pbcore
- Python 3 library for processing PacBio data files
-
- dep: python3-ujson
- ultra fast JSON encoder and decoder for Python 3
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时