[ Source: centrifuge ]
Пакунок: centrifuge (1.0.4.1-1 and others)
Links for centrifuge
Debian Resources:
Download Source Package centrifuge:
Maintainers:
External Resources:
- Homepage [ccb.jhu.edu]
Similar packages:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Інші пакунки пов'язані з centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.34) [hppa]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.38) [not hppa, ia64]
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- dep: libc6.1 (>= 2.37) [ia64]
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6.1-udeb
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- dep: libgcc-s1 (>= 3.0) [not hppa, ia64, riscv64]
- Допоміжна бібліотека GCC
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- Допоміжна бібліотека GCC
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- dep: libstdc++6 (>= 11) [hppa]
- Стандартна бібліотека C++ GNU, версії 3
- dep: libstdc++6 (>= 13.1) [not hppa]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
Завантажити centrifuge
| Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|---|
| amd64 | 1.0.4.1-1 | 568.1 kB | 1,780.0 kB | [список файлів] |
| arm64 | 1.0.4.1-1 | 520.6 kB | 1,670.0 kB | [список файлів] |
| hppa (unofficial port) | 1.0.3-11 | 597.6 kB | 1,679.0 kB | [список файлів] |
| ia64 (unofficial port) | 1.0.3-12 | 779.7 kB | 3,011.0 kB | [список файлів] |
| mips64el | 1.0.4.1-1 | 543.6 kB | 1,902.0 kB | [список файлів] |
| ppc64el | 1.0.4.1-1 | 578.2 kB | 1,863.0 kB | [список файлів] |
| riscv64 | 1.0.4.1-1 | 589.3 kB | 1,414.0 kB | [список файлів] |