[ Source: centrifuge ]
Пакунок: centrifuge (1.0.3-2)
Links for centrifuge
Debian Resources:
Download Source Package centrifuge:
Maintainers:
External Resources:
- Homepage [ccb.jhu.edu]
Similar packages:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Інші пакунки пов'язані з centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.14)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- Допоміжна бібліотека GCC
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- dep: libstdc++6 (>= 5.2)
- Стандартна бібліотека C++ GNU, версії 3
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- dep: python
- Інтерактивна об'єктно-орієнтована мова високого рівня (гілка 2.x)
Завантажити centrifuge
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| amd64 | 518.4 kB | 1,650.0 kB | [список файлів] |