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[ Source: seaview  ]

Пакунок: seaview (1:5.0.4-1)

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Multiplatform interface for sequence alignment and phylogeny

SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.

SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, implemented-in::c++, User Interface: Command Line, interface::graphical, interface::x11, Networking: Client, Network Protocol: Need an extra tag, Role: role::program, scope::utility, Interface Toolkit: FLTK, Purpose: Need an extra tag, use::comparing, use::editing, Printing, use::viewing, works-with-format::plaintext, Works with: works-with::biological-sequence, x11::application

Інші пакунки пов'язані з seaview

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Завантаження для всіх доступних архітектур
Архітектура Розмір пакунка Розмір після встановлення Файли
amd64 387.4 kB1,010.0 kB [список файлів]
arm64 351.3 kB982.0 kB [список файлів]
armel 325.6 kB910.0 kB [список файлів]
armhf 325.9 kB690.0 kB [список файлів]
i386 403.3 kB1,067.0 kB [список файлів]
mips64el 378.7 kB1,190.0 kB [список файлів]
mipsel 379.9 kB1,147.0 kB [список файлів]
ppc64el 425.1 kB1,278.0 kB [список файлів]
s390x 356.5 kB1,058.0 kB [список файлів]