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[ Source: minimap2  ]

Пакунок: minimap2 (2.17+dfsg-12 and others)

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versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Інші пакунки пов'язані з minimap2

  • depends
  • recommends
  • suggests
  • enhances

Завантажити minimap2

Завантаження для всіх доступних архітектур
Архітектура Версія Розмір пакунка Розмір після встановлення Файли
amd64 2.17+dfsg-12+b3 354.9 kB467.0 kB [список файлів]
arm64 2.17+dfsg-12+b3 346.9 kB451.0 kB [список файлів]
armel 2.17+dfsg-12+b3 365.9 kB506.0 kB [список файлів]
armhf 2.17+dfsg-12+b3 365.4 kB450.0 kB [список файлів]
i386 2.17+dfsg-12+b3 386.1 kB574.0 kB [список файлів]
mips64el 2.17+dfsg-12+b3 375.1 kB526.0 kB [список файлів]
mipsel 2.17+dfsg-12+b3 388.0 kB549.0 kB [список файлів]
ppc64el 2.17+dfsg-12+b3 365.8 kB559.0 kB [список файлів]
s390x 2.17+dfsg-12+b3 367.9 kB523.0 kB [список файлів]