Paket: minia (3.2.6-4 ve diğerleri)

minia için bağlantılar

Debian Kaynakları:

minia Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [minia.genouest.org]

Benzer paketler:

short-read biological sequence assembler

What was referred to as "next-generation" DNA sequencing up to the year 2020 delivered only "short" reads up to ~600 base pairs in length that would then have to be puzzled by random overlaps in their sequence towards a complete genome. This is the genome assembly. And there are many biological pitfalls on long stretches of low complexity regions and copy number variations and other sorts of redundancies that render this difficult.

This package provides a short-read DNA sequence assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

The output of Minia is a set of contigs, i.e. stretches of gap-free linear overlaps of short reads. In the best possible case this is a whole chromosome.

Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

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bağımlılıklar

tavsiye edilen

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enhances

dep: bc

GNU bc arbitrary precision calculator language
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgatbcore3 (>= 1.4.2+dfsg)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhdf5-103-1t64

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: zlib1g

compression library - runtime

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

sug: bandage

Bioinformatics Application for Navigating De novo Assembly Graphs Easily

minia indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
riscv64	3.2.6-4+b1	388,9 kB	689,0 kB	[dosya listesi]