[ Kaynak: parsnp ]
Paket: parsnp (2.0.5+dfsg-1)
parsnp için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
parsnp Kaynak Paketini İndir:
Geliştiriciler:
- Debian Med Packaging Team (QA Sayfası, Posta Arşivi)
- Andreas Tille (QA Sayfası)
- Étienne Mollier (QA Sayfası)
Dış Kaynaklar:
- Ana Sayfa [harvest.readthedocs.org]
Benzer paketler:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
parsnp ile İlgili Diğer Paketler
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: harvest-tools
- archiving and postprocessing for reference-compressed genomic multi-alignments
-
- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [armel, armhf değil]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pyspoa
- Python bindings to spoa
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- dep: python3-tqdm
- fast, extensible progress bar for Python 3 and CLI tool
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- dep: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- dep: time
- GNU time program for measuring CPU resource usage
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
parsnp indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 200,9 kB | 1.947,0 kB | [dosya listesi] |
| arm64 | 191,2 kB | 1.947,0 kB | [dosya listesi] |
| armel | 187,0 kB | 1.906,0 kB | [dosya listesi] |
| armhf | 182,4 kB | 1.826,0 kB | [dosya listesi] |
| i386 | 200,6 kB | 1.942,0 kB | [dosya listesi] |
| mips64el | 203,2 kB | 2.022,0 kB | [dosya listesi] |
| ppc64el | 212,7 kB | 2.011,0 kB | [dosya listesi] |
| s390x | 184,6 kB | 1.947,0 kB | [dosya listesi] |