Paket: r-bioc-densvis (1.12.1+dfsg-1 ve diğerleri)
r-bioc-densvis için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
r-bioc-densvis Kaynak Paketini İndir:
- [r-bioc-densvis_1.12.1+dfsg-1.dsc]
- [r-bioc-densvis_1.12.1+dfsg.orig.tar.xz]
- [r-bioc-densvis_1.12.1+dfsg-1.debian.tar.xz]
Geliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [bioconductor.org]
Benzer paketler:
density-preserving data visualization via non-linear dimensionality reduction
Implements the density-preserving modification to t-SNE and UMAP described by Narayan et al. (2020) <doi:10.1101/2020.05.12.077776>. The non-linear dimensionality reduction techniques t-SNE and UMAP enable users to summarise complex high-dimensional sequencing data such as single cell RNAseq using lower dimensional representations. These lower dimensional representations enable the visualisation of discrete transcriptional states, as well as continuous trajectory (for example, in early development). However, these methods focus on the local neighbourhood structure of the data. In some cases, this results in misleading visualisations, where the density of cells in the low-dimensional embedding does not represent the transcriptional heterogeneity of data in the original high-dimensional space. den-SNE and densMAP aim to enable more accurate visual interpretation of high-dimensional datasets by producing lower-dimensional embeddings that accurately represent the heterogeneity of the original high-dimensional space, enabling the identification of homogeneous and heterogeneous cell states. This accuracy is accomplished by including in the optimisation process a term which considers the local density of points in the original high-dimensional space. This can help to create visualisations that are more representative of heterogeneity in the original high-dimensional space.
r-bioc-densvis ile İlgili Diğer Paketler
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- dep: libblas3 [sparc64]
- Basic Linear Algebra Reference implementations, shared library
- ya da libblas.so.3
- sanal paketi sağlayan libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libc6 (>= 2.29) [alpha, ia64, sh4 değil]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.29) [alpha]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64, x32]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support library
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC support library
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- dep: libgfortran5 (>= 8) [sparc64]
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: liblapack3 [sparc64]
- Library of linear algebra routines 3 - shared version
- ya da liblapack.so.3
- sanal paketi sağlayan libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: r-api-4.0
- sanal paketi sağlayan r-base-core
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- dep: r-api-bioc-3.17 [amd64, arm64 değil]
- Paket mevcut değil
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- dep: r-api-bioc-3.18 [amd64, arm64]
- sanal paketi sağlayan r-bioc-biocgenerics
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- dep: r-bioc-basilisk
- freezing Python dependencies inside Bioconductor packages
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- dep: r-cran-assertthat
- GNU R easy pre and post assertions
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- dep: r-cran-irlba
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
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- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-reticulate
- R interface to Python modules, classes, and functions
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- dep: r-cran-rtsne [amd64, arm64]
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-rtsne [amd64, arm64 değil]
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
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- sug: r-cran-testthat
- GNU R testsuite
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- sug: r-cran-uwot
- GNU R uniform manifold approximation and projection (UMAP)
r-bioc-densvis indir
Mimari | Sürüm | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|---|
alpha (resmi olmayan port) | 1.10.3+dfsg-1 | 79,3 kB | 214,0 kB | [dosya listesi] |
amd64 | 1.12.1+dfsg-1 | 81,9 kB | 202,0 kB | [dosya listesi] |
arm64 | 1.12.1+dfsg-1 | 76,3 kB | 214,0 kB | [dosya listesi] |
hppa (resmi olmayan port) | 1.10.3+dfsg-1 | 81,8 kB | 212,0 kB | [dosya listesi] |
ia64 (resmi olmayan port) | 1.10.3+dfsg-1 | 92,0 kB | 305,0 kB | [dosya listesi] |
m68k (resmi olmayan port) | 1.10.3+dfsg-1 | 77,7 kB | 189,0 kB | [dosya listesi] |
ppc64 (resmi olmayan port) | 1.10.3+dfsg-1 | 86,1 kB | 281,0 kB | [dosya listesi] |
sh4 (resmi olmayan port) | 1.10.3+dfsg-1 | 87,3 kB | 213,0 kB | [dosya listesi] |
sparc64 (resmi olmayan port) | 1.10.3+dfsg-1 | 74,3 kB | 1.115,0 kB | [dosya listesi] |
x32 (resmi olmayan port) | 1.10.3+dfsg-1 | 80,8 kB | 193,0 kB | [dosya listesi] |