Paket: r-bioc-ensembldb (2.28.1+dfsg-1)

r-bioc-ensembldb için bağlantılar

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r-bioc-ensembldb Kaynak Paketini İndir:

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Dış Kaynaklar:

Ana Sayfa [bioconductor.org]

Benzer paketler:

GNU R utilities to create and use an Ensembl based annotation database

The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes.

r-bioc-ensembldb ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: r-api-4.0

sanal paketi sağlayan r-base-core
dep: r-api-bioc-3.19

sanal paketi sağlayan r-bioc-biocgenerics
dep: r-bioc-annotationdbi (>= 1.31.19)

GNU R Annotation Database Interface for BioConductor
dep: r-bioc-annotationfilter (>= 1.5.2)

facilities for filtering Bioconductor annotation resources
dep: r-bioc-biobase

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.15.10)

generic functions for Bioconductor
dep: r-bioc-biostrings (>= 2.47.9)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicfeatures (>= 1.49.6)

GNU R tools for making and manipulating transcript centric annotations
dep: r-bioc-genomicranges (>= 1.31.18)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.13.24)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-protgenerics

S4 generic functions for Bioconductor proteomics infrastructure
dep: r-bioc-rsamtools

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.23.10)

BioConductor S4 implementation of vectors and lists
dep: r-cran-curl

GNU R modern and flexible web client for R
dep: r-cran-dbi

GNU R package providing a generic database interface
dep: r-cran-rsqlite (>= 1.1)

Database Interface R driver for SQLite

sug: r-bioc-annotationhub

GNU R client to access AnnotationHub resources
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-ggbio (>= 1.24.0)

Visualization tools for genomic data
sug: r-bioc-gviz (>= 1.20.0)

Plotting data and annotation information along genomic coordinates
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

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Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	1.473,8 kB	2.342,0 kB	[dosya listesi]