Paket: r-bioc-tcgabiolinks (2.18.0+dfsg-1)

r-bioc-tcgabiolinks için bağlantılar

Debian Kaynakları:

r-bioc-tcgabiolinks Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [bioconductor.org]

Benzer paketler:

GNU R/Bioconductor package for integrative analysis with GDC data

The aim of TCGAbiolinks is:

 1) facilitate the GDC open-access data retrieval,
 2) prepare the data using the appropriate pre-processing strategies,
 3) provide the means to carry out different standard analyses and
 4) to easily reproduce earlier research results.

In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

r-bioc-tcgabiolinks ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: r-api-4.0

sanal paketi sağlayan r-base-core
dep: r-api-bioc-3.12

sanal paketi sağlayan r-bioc-biocgenerics
dep: r-base-core (>= 4.0.3-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biomart

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
dep: r-bioc-genomicranges

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-s4vectors

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.4.0)

BioConductor assay container
dep: r-bioc-tcgabiolinksgui.data

Data for the TCGAbiolinksGUI package
dep: r-cran-data.table

GNU R extension of Data.frame
dep: r-cran-downloader (>= 0.4)

GNU R package for downloading files over http and https
dep: r-cran-dplyr

GNU R grammar of data manipulation
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-httr (>= 1.2.1)

GNU R tools for working with URLs and HTTP
dep: r-cran-jsonlite (>= 1.0.0)

Robust, High Performance JSON Parser and Generator for R
dep: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: r-cran-purrr

GNU R functional programming tools
dep: r-cran-r.utils

GNU R various programming utilities
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rvest (>= 0.3.0)

Easily Harvest (Scrape) Web Pages
dep: r-cran-stringr (>= 1.0.0)

Make it easier to work with strings
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr

GNU R package to easily tidy data
dep: r-cran-xml (>= 3.98.0)

GNU R package for XML parsing and generation
dep: r-cran-xml2

GNU R XML parser

rec: r-bioc-edaseq

GNU R exploratory data analysis and normalization for RNA-Seq
rec: r-bioc-edger

Empirical analysis of digital gene expression data in R
rec: r-cran-survminer

GNU R drawing survival curves using 'ggplot2'
rec: r-cran-testthat

GNU R testsuite

sug: r-bioc-affy

BioConductor methods for Affymetrix Oligonucleotide Arrays
sug: r-bioc-biobase

base functions for Bioconductor
sug: r-bioc-biocstyle

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-complexheatmap

make complex heatmaps using GNU R
sug: r-bioc-consensusclusterplus

GNU R determining cluster count and membership
sug: r-bioc-genefilter

methods for filtering genes from microarray experiments
sug: r-bioc-limma

linear models for microarray data
sug: r-bioc-sva

GNU R Surrogate Variable Analysis
sug: r-cran-circlize

Circular Visualization
sug: r-cran-devtools

Tools to Make Developing R Packages Easier
sug: r-cran-doparallel

GNU R foreach parallel adaptor for the parallel package
sug: r-cran-ggrepel (>= 0.6.3)

auto-position non-overlapping text labels in plots
sug: r-cran-gridextra

GNU R package with extensions for the grid package
sug: r-cran-igraph

GNU R network analysis and visualization
sug: r-cran-jpeg

Read and write JPEG images
sug: r-cran-parmigene

Parallel Mutual Information to establish Gene Networks
sug: r-cran-png

GNU R package to read and write PNG images
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-scales

Scale functions for visualization
sug: r-cran-survival

GNU R package for survival analysis

r-bioc-tcgabiolinks indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
all	5.494,3 kB	5.890,0 kB	[dosya listesi]