Paket: augustus (3.5.0+dfsg-2)

augustus için bağlantılar

Debian Kaynakları:

augustus Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [bioinf.uni-greifswald.de]

Benzer paketler:

gene prediction in eukaryotic genomes

AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.

Etiketler: Alan: Biyoloji, Biyoinformatik, Geliştirildiği dil: implemented-in::c++, interface::commandline, Rol: Program, Bilim: science::calculation, scope::utility, Arayüz Araç Takımı: Ncurses TUI, Amaç: use::analysing, works-with::biological-sequence

augustus ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: augustus-data

data files for AUGUSTUS
dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libboost-iostreams1.74.0 (>= 1.74.0)

Boost.Iostreams Library
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libcolamd2 (>= 1:4.5.2)

column approximate minimum degree ordering library for sparse matrices
dep: libgcc-s1 (>= 3.0) [amd64, s390x]

GCC support library

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [mipsel, ppc64el]

dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

dep: libgcc-s1 (>= 7) [i386]
dep: libgsl27 (>= 2.7.1)

GNU Scientific Library (GSL) -- library package
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libmariadb3 (>= 3.0.0)

MariaDB database client library
dep: libmysql++3v5 (>= 3.2.5-1~)

MySQL C++ library bindings (runtime)
dep: libsqlite3-0 (>= 3.5.9)

SQLite 3 shared library
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

sug: cdbfasta

Constant DataBase indexing and retrieval tools for multi-FASTA files
sug: diamond-aligner

accelerated BLAST compatible local sequence aligner
sug: libdbd-mysql-perl

Perl5 database interface to the MariaDB/MySQL database
sug: libfile-which-perl

Perl module for searching paths for executable programs
sug: libparallel-forkmanager-perl

simple parallel processing fork manager for Perl
sug: libyaml-perl

YAML Ain't Markup Language
sug: python3-biopython

Python3 library for bioinformatics

augustus indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.000,1 kB	10.856,0 kB	[dosya listesi]
arm64	1.715,1 kB	10.617,0 kB	[dosya listesi]
armel	1.693,3 kB	10.781,0 kB	[dosya listesi]
armhf	1.631,3 kB	7.837,0 kB	[dosya listesi]
i386	2.074,9 kB	11.756,0 kB	[dosya listesi]
mips64el	1.817,8 kB	14.215,0 kB	[dosya listesi]
mipsel	1.835,9 kB	13.506,0 kB	[dosya listesi]
ppc64el	1.934,1 kB	13.434,0 kB	[dosya listesi]
s390x	1.755,7 kB	11.409,0 kB	[dosya listesi]