[ Källkod: mindthegap ]
Paket: mindthegap (2.3.0-4)
Länkar för mindthegap
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Hämta källkodspaketet mindthegap:
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Externa resurser:
- Hemsida [github.com]
Liknande paket:
performs detection and assembly of DNA insertion variants in NGS read datasets
Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.
Andra paket besläktade med mindthegap
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- dep: libc6 (>= 2.38)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2+dfsg-7)
- dynamic library of the Genome Analysis Toolbox
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- dep: libgcc-s1 (>= 3.0)
- GCC stödbibliotek
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 13.1)
- GNU standardbibliotek v3 för C++
Hämta mindthegap
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| ppc64el | 238,5 kbyte | 1.177,0 kbyte | [filförteckning] |