[ Källkod: parsnp ]
Paket: parsnp (1.2+dfsg-5)
Länkar för parsnp
Debianresurser:
Hämta källkodspaketet parsnp:
Ansvariga:
Externa resurser:
- Hemsida [harvest.readthedocs.org]
Liknande paket:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Andra paket besläktade med parsnp
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- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- dep: libc6 (>= 2.27)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc1 (>= 1:3.0) [ej armhf]
- GCC stödbibliotek
- dep: libgcc1 (>= 1:3.5) [armhf]
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
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- dep: libstdc++6 (>= 5.2)
- GNU standardbibliotek v3 för C++
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: phipack
- PHI test and other tests of recombination
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- dep: python
- interactive high-level object-oriented language (Python2 version)
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- dep: python-numpy
- Numerical Python adds a fast array facility to the Python language
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- rec: python-dendropy
- DendroPy Phylogenetic Computing Library (Python 2)
Hämta parsnp
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 516,2 kbyte | 913,0 kbyte | [filförteckning] |
| arm64 | 508,8 kbyte | 873,0 kbyte | [filförteckning] |
| armhf | 492,4 kbyte | 784,0 kbyte | [filförteckning] |
| i386 | 518,4 kbyte | 920,0 kbyte | [filförteckning] |