Paket: r-bioc-genomicalignments (1.18.1-1)

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BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andra paket besläktade med r-bioc-genomicalignments

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.17) [arm64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.4) [ej arm64]
dep: r-api-3.5

virtuellt paket som tillhandahålls av r-base-core
dep: r-api-bioc-3.8

virtuellt paket som tillhandahålls av r-bioc-biocgenerics
dep: r-base-core (>= 3.5.2-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.15.3)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.13.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.33.4)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.15.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.19.11)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.9.13)

BioConductor assay container

rec: r-bioc-shortread (>= 1.24.0)

GNU R classes and methods for high-throughput short-read sequencing data
rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks

Hämta r-bioc-genomicalignments

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	2.052,3 kbyte	2.873,0 kbyte	[filförteckning]
arm64	2.051,3 kbyte	2.873,0 kbyte	[filförteckning]
armhf	2.048,8 kbyte	2.844,0 kbyte	[filförteckning]
i386	2.047,3 kbyte	2.874,0 kbyte	[filförteckning]