Paketti: r-bioc-genomicalignments (1.18.1-1)

Links for r-bioc-genomicalignments

Debian-palvelut:

Imuroi lähdekoodipaketti r-bioc-genomicalignments:

Ylläpitäjät:

External Resources:

Kotisivu [bioconductor.org]

Samankaltaisia paketteja:

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Muut pakettiin r-bioc-genomicalignments liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.17) [arm64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.4) [ei arm64]
dep: r-api-3.5

näennäispaketti, jonka toteuttaa r-base-core
dep: r-api-bioc-3.8

näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
dep: r-base-core (>= 3.5.2-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biocgenerics (>= 0.15.3)

generic functions for Bioconductor
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.47.6)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.13.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.33.4)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.15.12)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rsamtools (>= 1.31.2)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.19.11)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-summarizedexperiment (>= 1.9.13)

BioConductor assay container

rec: r-bioc-shortread (>= 1.24.0)

GNU R classes and methods for high-throughput short-read sequencing data
rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks

Imuroi r-bioc-genomicalignments

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	2,052.3 kt	2,873.0 kt	[tiedostoluettelo]
arm64	2,051.3 kt	2,873.0 kt	[tiedostoluettelo]
armhf	2,048.8 kt	2,844.0 kt	[tiedostoluettelo]
i386	2,047.3 kt	2,874.0 kt	[tiedostoluettelo]