alla flaggor
bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Källkod: jellyfish  ]

Paket: python3-dna-jellyfish (2.3.0-10)

Länkar för python3-dna-jellyfish

Screenshot

Debianresurser:

Hämta källkodspaketet jellyfish:

Ansvariga:

Externa resurser:

Liknande paket:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andra paket besläktade med python3-dna-jellyfish

  • beror
  • rekommenderar
  • föreslår
  • enhances

Hämta python3-dna-jellyfish

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
ppc64el 56,4 kbyte237,0 kbyte [filförteckning]