Пакунок: python3-dna-jellyfish (2.3.0-10)
Links for python3-dna-jellyfish
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
External Resources:
- Homepage [www.cbcb.umd.edu]
Similar packages:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Інші пакунки пов'язані з python3-dna-jellyfish
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- dep: libc6 (>= 2.17)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- Допоміжна бібліотека GCC
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- Стандартна бібліотека C++ GNU, версії 3
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- dep: python3
- Інтерактивна обʼєктно-орієнтована мова високого рівня (типова версія „python3“)
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
Завантажити python3-dna-jellyfish
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| ppc64el | 56.4 kB | 237.0 kB | [список файлів] |