[ Källkod: gasic ]
Paket: gasic (0.0.r19-8)
Länkar för gasic
Debianresurser:
Hämta källkodspaketet gasic:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Andreas Tille (QA-sida)
- Navid Fehrenbacher (QA-sida)
- Roland Fehrenbacher (QA-sida)
Externa resurser:
- Hemsida [sourceforge.net]
Liknande paket:
genome abundance similarity correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.
Andra paket besläktade med gasic
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- dep: bowtie
- Ultrafast memory-efficient short read aligner
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: bwa
- Burrows-Wheeler Aligner
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy
- scientific tools for Python 3
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- dep: seqan-apps
- C++ library for the analysis of biological sequences
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- sug: gasic-examples
- genome abundance similarity correction (example data)
Hämta gasic
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| all | 20,2 kbyte | 80,0 kbyte | [filförteckning] |