[ Zdroj: trinityrnaseq ]
Balík: trinityrnaseq (2.11.0+dfsg-6)
Odkazy pre trinityrnaseq
Zdroje Debian:
Stiahnuť zdrojový balík trinityrnaseq:
- [trinityrnaseq_2.11.0+dfsg-6.dsc]
- [trinityrnaseq_2.11.0+dfsg.orig.tar.xz]
- [trinityrnaseq_2.11.0+dfsg-6.debian.tar.xz]
Správcovia:
Externé zdroje:
- Domovská stránka [trinityrnaseq.github.io]
Podobné balíky:
RNA-Seq De novo Assembly
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
Ostatné balíky súvisiace s balíkom trinityrnaseq
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- dep: berkeley-express
- Streaming quantification for high-throughput sequencing
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- dep: bowtie
- Ultrafast memory-efficient short read aligner
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: curl
- nástroj príkazového riadka na prenos údajov so syntaxou URL
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- dep: default-jre-headless
- štandardné dynamické prostredie Java alebo kompatibilné s Javou (bez displeja)
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- dep: gmap
- spliced and SNP-tolerant alignment for mRNA and short reads
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
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- dep: jaligner
- Smith-Waterman algorithm with Gotoh's improvement
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- dep: jellyfish
- count k-mers in DNA sequences
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- dep: kallisto
- near-optimal RNA-Seq quantification
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- dep: libc6 (>= 2.27)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libcommons-collections4-java
- Apache Commons Collections - Extended Collections API for Java
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- dep: libgcc-s1 (>= 3.0)
- podporná knižnica GCC
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- dep: libgetopt-java
- GNU getopt - port do jazyka Java
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- dep: libgomp1 (>= 6)
- podporná knižnica GCC OpenMP (GOMP)
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjung-free-java
- Java Universal Network/Graph Framework
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- dep: libstdc++6 (>= 9)
- štandardná knižnica C++ GNU v3
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- dep: liburi-perl
- modul na manipuláciu a prístup k reťazcom URI
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- dep: libwww-perl
- jednoduché a konzistentné rozhranie k www
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: parafly
- parallel command processing using OpenMP
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- dep: perl
- Practical Extraction and Report Language od Larryho Walla
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-hisat2
- Python scripts accompanying hisat2
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- dep: python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
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- dep: python3-numpy
- schopnosti rýchlych polí do jazyka Python 3
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- dep: r-base-core
- jadro GNU R na štatistické výpočty a grafický systém
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-ctc
- Cluster and Tree Conversion
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- dep: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- dep: r-bioc-dexseq
- GNU R inference of differential exon usage in RNA-Seq
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- dep: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- dep: r-bioc-goseq
- GNU R gene ontology analyser for RNA-seq and other length biased data
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- dep: r-bioc-qvalue
- GNU R package for Q-value estimation for FDR control
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- dep: r-bioc-rots
- GNU R Teproducibility-Optimized Test Statistic
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- dep: r-bioc-tximport
- transcript-level estimates for biological sequencing
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- dep: r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
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- dep: r-cran-argparse
- GNU R command line parser for optional and positional arguments
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- dep: r-cran-cluster
- balík GNU R na klastrovú analýzu, ktorý napísali Rousseeuw et al
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- dep: r-cran-fastcluster
- Fast hierarchical clustering routines for GNU R
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- dep: r-cran-goplot
- GNU R visualization of functional analysis data
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- dep: r-cran-gplots
- GNU R package with tools for plotting data by Greg Warnes et al
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- dep: r-cran-readr
- GNU R package to read rectangular text data
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- dep: rna-star
- ultrafast universal RNA-seq aligner
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- dep: rsem
- RNA-Seq by Expectation-Maximization
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- dep: salmon
- wicked-fast transcript quantification from RNA-seq data
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: subread
- toolkit for processing next-gen sequencing data
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- dep: transdecoder
- find coding regions within RNA transcript sequences
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- dep: trimmomatic
- flexible read trimming tool for Illumina NGS data
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- dep: zlib1g (>= 1:1.1.4)
- komprimačná knižnica - dynamická verzia
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- rec: picard-tools
- Command line tools to manipulate SAM and BAM files
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- rec: r-cran-tidyverse
- Easily Install and Load the 'Tidyverse'
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- rec: tabix
- generic indexer for TAB-delimited genome position files
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- rec: trinityrnaseq-examples
- RNA-Seq De novo Assembly common example and testing files
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- sug: collectl
- nástroj na zhromažďovanie dát o výkonnosti Linuxu
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- sug: r-bioc-tximportdata
- Balík nie je dostupný
Stiahnuť trinityrnaseq
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 1,622.8 kB | 7,229.0 kB | [zoznam súborov] |
| arm64 | 1,567.1 kB | 7,021.0 kB | [zoznam súborov] |