Balík: python3-dna-jellyfish (2.3.0-10)
Odkazy pre python3-dna-jellyfish
Zdroje Debian:
Stiahnuť zdrojový balík jellyfish:
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Shaun Jackman (Stránka QA)
- Andreas Tille (Stránka QA)
- Michael R. Crusoe (Stránka QA)
Externé zdroje:
- Domovská stránka [www.cbcb.umd.edu]
Podobné balíky:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Ostatné balíky súvisiace s balíkom python3-dna-jellyfish
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- dep: libc6 (>= 2.14) [amd64]
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.4) [nie amd64, arm64, ppc64el]
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- dep: libgcc-s1 (>= 3.0) [nie armel, armhf, i386]
- podporná knižnica GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 5.2) [armel, armhf]
- štandardná knižnica C++ GNU v3
- dep: libstdc++6 (>= 9) [nie armel, armhf]
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
Stiahnuť python3-dna-jellyfish
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 53.6 kB | 173.0 kB | [zoznam súborov] |
| arm64 | 50.6 kB | 169.0 kB | [zoznam súborov] |
| armel | 52.8 kB | 166.0 kB | [zoznam súborov] |
| armhf | 53.4 kB | 138.0 kB | [zoznam súborov] |
| i386 | 60.7 kB | 178.0 kB | [zoznam súborov] |
| mips64el | 52.1 kB | 191.0 kB | [zoznam súborov] |
| ppc64el | 56.4 kB | 237.0 kB | [zoznam súborov] |