Pacote: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 e outros)

Links para t-coffee

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Pagina principal [www.tcoffee.org]

Pacotes similares:

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Etiquetas: Campo: Biologia, Bioinformática, Implementado em: implemented-in::c, interface::commandline, Função: Programa, Alcance: Utilitários, Propósito: use::analysing, use::comparing, Suporta o formato: Precisa de uma etiqueta extra, works-with-format::plaintext, works-with::TODO

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dep: libgcc-s1 (>= 3.3.4) [sh4]

dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

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dep: libgcc-s4 (>= 4.1.1) [hppa]

Biblioteca de suporte GCC
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rec: amap-align

Protein multiple alignment by sequence annealing
rec: clustalo

General-purpose multiple sequence alignment program for proteins
rec: clustalw

global multiple nucleotide or peptide sequence alignment
rec: dialign-tx

alinhador de seqüências múltiplas baseado em segmentos
rec: fsa

Fast Statistical Alignment of protein, RNA or DNA sequences
rec: kalign

Global and progressive multiple sequence alignment
rec: libsoap-lite-perl

Perl implementation of a SOAP client and server
rec: libxml-simple-perl

Perl module for reading and writing XML
rec: mafft

Multiple alignment program for amino acid or nucleotide sequences
rec: muscle

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rec: mustang

multiple structural alignment of proteins
rec: ncbi-blast+

next generation suite of BLAST sequence search tools
rec: poa

Partial Order Alignment for multiple sequence alignment
rec: prank

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
rec: probcons

PROBabilistic CONSistency-based multiple sequence alignment
rec: proda

alinhamento múltiplo de seqüências de proteína
rec: tm-align

structural alignment of proteins

sug: boxshade

embelezador de impressão de alinhamentos de seqüência múltipla
sug: seaview

Multiplatform interface for sequence alignment and phylogeny
sug: t-coffee-examples

annotated examples for the use of T-Coffee

Download de t-coffee

Baixe para todas as arquiteturas disponíveis
Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
alpha (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	997.0 kB	3,340.0 kB	[lista de arquivos]
amd64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,007.5 kB	2,715.0 kB	[lista de arquivos]
arm64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	914.7 kB	2,699.0 kB	[lista de arquivos]
armel	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	846.5 kB	2,569.0 kB	[lista de arquivos]
armhf	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	857.3 kB	1,929.0 kB	[lista de arquivos]
hppa (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	910.9 kB	2,720.0 kB	[lista de arquivos]
i386	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.5 kB	3,033.0 kB	[lista de arquivos]
ia64 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,208.2 kB	5,405.0 kB	[lista de arquivos]
loong64 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	900.8 kB	2,651.0 kB	[lista de arquivos]
m68k (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	893.9 kB	2,825.0 kB	[lista de arquivos]
mips64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	950.6 kB	3,380.0 kB	[lista de arquivos]
ppc64 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,020.1 kB	3,466.0 kB	[lista de arquivos]
ppc64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,063.4 kB	3,402.0 kB	[lista de arquivos]
riscv64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	996.7 kB	2,295.0 kB	[lista de arquivos]
s390x	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	921.2 kB	2,974.0 kB	[lista de arquivos]
sh4 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,073.0 kB	2,570.0 kB	[lista de arquivos]
sparc64 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	835.5 kB	3,150.0 kB	[lista de arquivos]
x32 (porte não oficial)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.6 kB	2,710.0 kB	[lista de arquivos]