Package: bowtie2 (2.5.4-1 and others)
Links for bowtie2
Debian Resources:
Download Source Package bowtie2:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Alexandre Mestiashvili (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [bowtie-bio.sourceforge.net]
Similar packages:
ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
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Download bowtie2
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
alpha (unofficial port) | 2.5.4-1 | 1,614.6 kB | 6,356.0 kB | [list of files] |
amd64 | 2.5.4-1 | 1,474.7 kB | 5,936.0 kB | [list of files] |
arm64 | 2.5.4-1 | 1,372.1 kB | 5,320.0 kB | [list of files] |
ia64 (unofficial port) | 2.5.1-1 | 2,341.5 kB | 11,597.0 kB | [list of files] |
m68k (unofficial port) | 2.4.2-2+b1 | 1,202.1 kB | 5,463.0 kB | [list of files] |
mips64el | 2.5.4-1 | 1,416.5 kB | 6,185.0 kB | [list of files] |
ppc64 (unofficial port) | 2.4.5-1 | 1,346.4 kB | 5,825.0 kB | [list of files] |
ppc64el | 2.5.4-1 | 1,519.6 kB | 6,024.0 kB | [list of files] |
riscv64 | 2.5.4-1 | 1,638.0 kB | 4,724.0 kB | [list of files] |
sh4 (unofficial port) | 2.4.2-2+b1 | 1,683.6 kB | 4,651.0 kB | [list of files] |
sparc64 (unofficial port) | 2.4.5-1 | 1,197.3 kB | 5,155.0 kB | [list of files] |