Pakiet: r-bioc-shortread (1.62.0-1)

Odnośniki dla r-bioc-shortread

Zasoby systemu Debian:

Pobieranie pakietu źródłowego r-bioc-shortread:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [bioconductor.org]

Podobne pakiety:

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Inne pakiety związane z r-bioc-shortread

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.14)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.0)

Biblioteka wspomagająca GCC
dep: libstdc++6 (>= 11)

Standardowa biblioteka GNU C++, wersja 3
dep: r-api-4.0

pakiet wirtualny udostępniany przez r-base-core
dep: r-api-bioc-3.19

pakiet wirtualny udostępniany przez r-bioc-biocgenerics
dep: r-bioc-biobase (>= 2.64.0)

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.50.0)

generic functions for Bioconductor
dep: r-bioc-biocparallel (>= 1.38.0)

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.72.1)

GNU R string objects representing biological sequences
dep: r-bioc-genomeinfodb (>= 1.40.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicalignments (>= 1.40.0)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-genomicranges (>= 1.56.1)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.38.1)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-pwalign (>= 1.0.0-2~0exp1)

Perform pairwise sequence alignments
dep: r-bioc-rhtslib (>= 3.0.0)

HTSlib high-throughput sequencing library as GNU R package
dep: r-bioc-rsamtools (>= 2.20.0)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import
dep: r-bioc-s4vectors (>= 0.42.1)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-xvector (>= 0.44.0)

BioConductor representation and manpulation of external sequences
dep: r-bioc-zlibbioc (>= 1.50.0)

(Virtual) zlibbioc Bioconductor package
dep: r-cran-hwriter

HTML Writer - Outputs R objects in HTML format
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-latticeextra

GNU R package of additional graphical displays based on lattice
dep: zlib1g (>= 1:1.1.4)

Biblioteka kompresyjna - pliki wykonawcze

sug: r-bioc-biocstyle (>= 2.32.1)

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-biomart (>= 2.60.1)

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
sug: r-bioc-genomicfeatures (>= 1.56.0)

GNU R tools for making and manipulating transcript centric annotations
sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-runit

GNU R package providing unit testing framework

Pobieranie r-bioc-shortread

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	5 095,4 KiB	8 206,0 KiB	[lista plików]