Pakiet: ea-utils (1.1.2+dfsg-6)

Odnośniki dla ea-utils

Zasoby systemu Debian:

Pobieranie pakietu źródłowego ea-utils:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [expressionanalysis.github.io]

Podobne pakiety:

command-line tools for processing biological sequencing data

Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.

Primarily written to support an Illumina based pipeline - but should work with any FASTQs.

Main Tools are:

 * fastq-mcf

Scans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.

 * fastq-multx

Demultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.

 * fastq-join

Similar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.

 * varcall

Takes a pileup and calculates variants in a more easily parameterized manner than some other tools.

Inne pakiety związane z ea-utils

wymaga

poleca

sugeruje

enhances

dep: libc6 (>= 2.29)

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.0) [nie armhf, i386, mipsel]

Biblioteka wspomagająca GCC

dep: libgcc-s1 (>= 3.5) [armhf]

dep: libgcc-s1 (>= 4.2) [i386, mipsel]
dep: libgsl25 (>= 2.6)

GNU Scientific Library (GSL) -- library package
dep: libstdc++6 (>= 5.2)

Standardowa biblioteka GNU C++, wersja 3
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-formula

GNU R package for extended model formulas
dep: r-cran-getopt

GNU R package providing command-line parsing functionality
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-hmisc

GNU R miscellaneous functions by Frank Harrell
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-survival

GNU R package for survival analysis
dep: zlib1g (>= 1:1.2.3.3)

Biblioteka kompresyjna - pliki wykonawcze

rec: med-config (>= 2.1)

Debian Med general config package

Pobieranie ea-utils

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	214,0 KiB	740,0 KiB	[lista plików]
arm64	149,9 KiB	532,0 KiB	[lista plików]
armhf	146,2 KiB	417,0 KiB	[lista plików]
i386	226,0 KiB	749,0 KiB	[lista plików]
mips64el	214,6 KiB	853,0 KiB	[lista plików]
mipsel	216,7 KiB	809,0 KiB	[lista plików]
ppc64el	176,9 KiB	916,0 KiB	[lista plików]
s390x	151,2 KiB	580,0 KiB	[lista plików]