Pakiet: rsem (1.3.3+dfsg-1)

Odnośniki dla rsem

Zasoby systemu Debian:

Pobieranie pakietu źródłowego rsem:

Opiekunowie:

Zasoby zewnętrzne:

Strona internetowa [deweylab.github.io]

Podobne pakiety:

RNA-Seq by Expectation-Maximization

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, It can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate. Genomic-coordinate files can be visualized by both UCSC Genome browser and Broad Institute’s Integrative Genomics Viewer (IGV). Transcript-coordinate files can be visualized by IGV. RSEM also has its own scripts to generate transcript read depth plots in pdf format. The unique feature of RSEM is, the read depth plots can be stacked, with read depth contributed to unique reads shown in black and contributed to multi-reads shown in red. In addition, models learned from data can also be visualized. Last but not least, RSEM contains a simulator.

Inne pakiety związane z rsem

wymaga

poleca

sugeruje

enhances

dep: bowtie

Ultrafast memory-efficient short read aligner

lub bowtie2

ultrafast memory-efficient short read aligner
dep: libc6 (>= 2.15) [nie arm64, ppc64el]

Biblioteka GNU C: biblioteki współdzielone
również pakiet wirtualny udostępniany przez libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]
dep: libgcc-s1 (>= 3.0) [nie ppc64el]

Biblioteka wspomagająca GCC

dep: libgcc-s1 (>= 3.4.4) [ppc64el]
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 9)

Standardowa biblioteka GNU C++, wersja 3
dep: perl

praktyczny język ekstrakcji i raportowania Larry'ego Walla
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: r-base-core

GNU R core of statistical computation and graphics system

sug: hisat2

graph-based alignment of short nucleotide reads to many genomes
sug: r-bioc-ebseq

R package for RNA-Seq Differential Expression Analysis

Pobieranie rsem

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	35 292,1 KiB	37 142,0 KiB	[lista plików]
arm64	35 239,1 KiB	36 906,0 KiB	[lista plików]
mips64el	35 266,3 KiB	37 493,0 KiB	[lista plików]
ppc64el	35 291,9 KiB	37 730,0 KiB	[lista plików]
s390x	35 240,8 KiB	37 130,0 KiB	[lista plików]