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[ Bron: maqview  ]

Pakket: maqview (0.2.5-12)

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graphical read alignment viewer for short gene sequences

Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.

In comparison to tgap-maq, the text-based read alignment viewer written by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 116,6 kB904,0 kB [overzicht]
arm64 109,6 kB953,0 kB [overzicht]
armel 98,9 kB772,0 kB [overzicht]
armhf 99,1 kB660,0 kB [overzicht]
i386 125,3 kB908,0 kB [overzicht]
mips64el 116,5 kB1.114,0 kB [overzicht]
ppc64el 124,0 kB1.144,0 kB [overzicht]
riscv64 120,0 kB785,0 kB [overzicht]
s390x 117,4 kB932,0 kB [overzicht]