Pakket: libvcflib-tools (1.0.0~rc2+dfsg-2)
Verwijzigingen voor libvcflib-tools
Debian bronnen:
Het bronpakket libvcflib downloaden:
- [libvcflib_1.0.0~rc2+dfsg-2.dsc]
- [libvcflib_1.0.0~rc2+dfsg.orig.tar.xz]
- [libvcflib_1.0.0~rc2+dfsg-2.debian.tar.xz]
Beheerders:
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
C++ library for parsing and manipulating VCF files (tools)
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.
vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:
* an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files.
This package contains several tools using the library.
Andere aan libvcflib-tools gerelateerde pakketten
|
|
|
|
-
- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.23)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
-
- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
-
- dep: libgcc1 (>= 1:3.0)
- GCC support bibliotheek
-
- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
-
- dep: liblzma5 (>= 5.1.1alpha+20110809)
- XZ-format compression library
-
- dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
- determine similar regions between two strings or genomic sequences (lib)
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: libtabixpp0
- C++ wrapper to tabix indexer
-
- dep: libvcflib1
- C++ library for parsing and manipulating VCF files
-
- dep: python
- interactive high-level object-oriented language (Python2 version)
-
- dep: r-base-core
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- dep: r-cran-gridbase
- GNU R Integration of base and grid graphics
-
- dep: r-cran-plyr
- tools for splitting, applying and combining data
-
- dep: zlib1g (>= 1:1.1.4)
- compressiebibliotheek - programma's
-
- sug: r-cran-pracma
- practical numerical math functions for GNU R