Pakket: paleomix (1.3.2-1)
Verwijzigingen voor paleomix
Debian bronnen:
Het bronpakket paleomix downloaden:
Beheerders:
Externe bronnen:
- Homepage [geogenetics.ku.dk]
Vergelijkbare pakketten:
pipelines and tools for the processing of ancient and modern HTS data
The PALEOMIX pipelines are a set of pipelines and tools designed to aid the rapid processing of High-Throughput Sequencing (HTS) data: The BAM pipeline processes de-multiplexed reads from one or more samples, through sequence processing and alignment, to generate BAM alignment files useful in downstream analyses; the Phylogenetic pipeline carries out genotyping and phylogenetic inference on BAM alignment files, either produced using the BAM pipeline or generated elsewhere; and the Zonkey pipeline carries out a suite of analyses on low coverage equine alignments, in order to detect the presence of F1-hybrids in archaeological assemblages. In addition, PALEOMIX aids in metagenomic analysis of the extracts.
The pipelines have been designed with ancient DNA (aDNA) in mind, and includes several features especially useful for the analyses of ancient samples, but can all be for the processing of modern samples, in order to ensure consistent data processing.
Andere aan paleomix gerelateerde pakketten
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- Burrows-Wheeler Aligner
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- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
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- dep: mafft
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- colored terminal output for Python 3's logging module
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- replacement for argparse with config files and environment variables (Python 3)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- roundtrip YAML parser/emitter (Python 3 module)
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- Setproctitle implementation for Python 3
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- GNU R core of statistical computation and graphics system
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