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Pakket: libfastahack-dev (1.0.0+dfsg-7)

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library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Softwareontwikkeling: Bibliotheken, Role: Development Library

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 26,4 kB120,0 kB [overzicht]
arm64 25,4 kB115,0 kB [overzicht]
armel 27,5 kB110,0 kB [overzicht]
armhf 27,8 kB98,0 kB [overzicht]
i386 29,2 kB105,0 kB [overzicht]
mips64el 29,2 kB143,0 kB [overzicht]
mipsel 30,1 kB114,0 kB [overzicht]
ppc64el 28,0 kB127,0 kB [overzicht]
s390x 25,0 kB119,0 kB [overzicht]