Pakket: centrifuge (1.0.3-8)

Verwijzigingen voor centrifuge

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Het bronpakket centrifuge downloaden:

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Externe bronnen:

Homepage [ccb.jhu.edu]

Vergelijkbare pakketten:

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere aan centrifuge gerelateerde pakketten

depends

recommends

suggests

enhances

dep: hisat2

graph-based alignment of short nucleotide reads to many genomes
dep: jellyfish

count k-mers in DNA sequences
dep: libc6 (>= 2.29)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libstdc++6 (>= 9)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

centrifuge downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	525,0 kB	1.669,0 kB	[overzicht]
arm64	492,5 kB	1.463,0 kB	[overzicht]
armel	489,3 kB	1.491,0 kB	[overzicht]
armhf	483,2 kB	1.171,0 kB	[overzicht]
i386	545,5 kB	1.799,0 kB	[overzicht]
mips64el	523,3 kB	1.805,0 kB	[overzicht]
ppc64el	551,4 kB	1.787,0 kB	[overzicht]