Pakket: bowtie2 (2.5.0-3 en anderen)

Verwijzigingen voor bowtie2

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Het bronpakket bowtie2 downloaden:

Beheerders:

Externe bronnen:

Homepage [bowtie-bio.sourceforge.net]

Vergelijkbare pakketten:

ultrafast memory-efficient short read aligner

is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.

Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

Andere aan bowtie2 gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0)

GCC support bibliotheek
dep: libstdc++6 (>= 12)

GNU Standard C++ Library v3
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

compressiebibliotheek - programma's

sug: bowtie2-examples

Examples for bowtie2

bowtie2 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
ppc64el	2.5.0-3+b2	1.427,4 kB	5.764,0 kB	[overzicht]