Package: qcumber (2.3.0-2)

Links for qcumber

Debian Resources:

Download Source Package qcumber:

Maintainers:

External Resources:

Homepage [gitlab.com]

Similar packages:

quality control of genomic sequences

QCPipeline is a tool for quality control. The workflow is as follows:

 1. Quality control with FastQC
 2. Trim Reads with Trimmomatic
 3. Quality control of trimmed reads with FastQC
 4. Map reads against reference using bowtie2
 5. Classify reads with Kraken

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dep: debconf (>= 0.5)

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or debconf-2.0

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dep: libjs-bootstrap

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dep: libjs-d3

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dep: libjs-jquery

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dep: python3

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dep: python3-biopython

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dep: python3-jinja2

small but fast and easy to use stand-alone template engine
dep: python3-matplotlib

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dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-bioc-savr

GNU R parse and analyze Illumina SAV files
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-quantreg

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dep: snakemake

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Download qcumber

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Architecture	Package Size	Installed Size	Files
all	49.3 kB	236.0 kB	[list of files]