パッケージ: examl (3.0.22-5)
Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
その他の examl 関連パッケージ
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
-
- dep: libopenmpi3t64 (>= 4.1.6)
- high performance message passing library -- shared library
-
- dep: openmpi-bin
- high performance message passing library -- binaries
examl のダウンロード
アーキテクチャ | パッケージサイズ | インストールサイズ | ファイル |
---|---|---|---|
amd64 | 931.6 kB | 5,969.0 kB | [ファイル一覧] |
arm64 | 780.5 kB | 1,663.0 kB | [ファイル一覧] |
armel | 796.9 kB | 1,872.0 kB | [ファイル一覧] |
armhf | 785.1 kB | 1,520.0 kB | [ファイル一覧] |
i386 | 1,078.8 kB | 7,035.0 kB | [ファイル一覧] |
mips64el | 816.6 kB | 1,811.0 kB | [ファイル一覧] |
ppc64el | 845.9 kB | 1,919.0 kB | [ファイル一覧] |
s390x | 818.0 kB | 1,995.0 kB | [ファイル一覧] |