パッケージ: mauve-aligner (2.4.0+4736-3)
mauve-aligner に関するリンク
Debian の資源:
mauve-aligner ソースパッケージをダウンロード:
- [mauve-aligner_2.4.0+4736-3.dsc]
- [mauve-aligner_2.4.0+4736.orig.tar.xz]
- [mauve-aligner_2.4.0+4736-3.debian.tar.xz]
メンテナ:
外部の資源:
- ホームページ [darlinglab.org]
類似のパッケージ:
multiple genome alignment
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
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- dep: java-wrappers
- wrappers for java executables
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- dep: libbiojava-java
- Java API to biological data and applications (default version)
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- dep: libbiojava1.7-java
- Java API to biological data and applications (version 1.7)
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- dep: libcommons-cli-java
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- dep: libdbus-java
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- dep: libunixsocket-java
- Unix socket API and bindings for Java
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- dep: libzeus-jscl-java
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- dep: progressivemauve
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mauve-aligner のダウンロード
| アーキテクチャ | パッケージサイズ | インストールサイズ | ファイル |
|---|---|---|---|
| amd64 | 480.1 kB | 545.0 kB | [ファイル一覧] |
| arm64 | 480.1 kB | 545.0 kB | [ファイル一覧] |
| armel | 480.1 kB | 545.0 kB | [ファイル一覧] |
| armhf | 480.1 kB | 545.0 kB | [ファイル一覧] |
| i386 | 480.1 kB | 545.0 kB | [ファイル一覧] |
| mips64el | 480.1 kB | 545.0 kB | [ファイル一覧] |
| mipsel | 480.1 kB | 545.0 kB | [ファイル一覧] |
| ppc64el | 480.1 kB | 545.0 kB | [ファイル一覧] |
| s390x | 480.1 kB | 545.0 kB | [ファイル一覧] |