[ Source: r-bioc-dada2 ]
Package: r-bioc-dada2 (1.32.0+dfsg-1 and others)
Links for r-bioc-dada2
Debian Resources:
Download Source Package r-bioc-dada2:
- [r-bioc-dada2_1.32.0+dfsg-1.dsc]
- [r-bioc-dada2_1.32.0+dfsg.orig.tar.xz]
- [r-bioc-dada2_1.32.0+dfsg-1.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [bioconductor.org]
Similar packages:
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.
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Download r-bioc-dada2
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 1.32.0+dfsg-1 | 2,745.5 kB | 3,148.0 kB | [list of files] |
| x32 (unofficial port) | 1.26.0+dfsg-1 | 2,721.0 kB | 3,079.0 kB | [list of files] |