[ Source: r-bioc-dada2 ]
Paketti: r-bioc-dada2 (1.34.0+dfsg-2 ja muut)
Links for r-bioc-dada2
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-dada2:
- [r-bioc-dada2_1.34.0+dfsg-2.dsc]
- [r-bioc-dada2_1.34.0+dfsg.orig.tar.xz]
- [r-bioc-dada2_1.34.0+dfsg-2.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret sequencing data from microbiota - the relative abundance of bacterial and/or yeast, typically measured in the gut. It infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.
Muut pakettiin r-bioc-dada2 liittyvät paketit
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- dep: libc6 (>= 2.34) [x32]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.38) [amd64]
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libstdc++6 (>= 11) [x32]
- GNU standardi C++ -kirjasto, versio 3
- dep: libstdc++6 (>= 14) [amd64]
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- dep: libtbb12 (>= 2022.0.0) [amd64]
- parallelism library for C++ - runtime files
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Paketti ei saatavilla
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- dep: r-api-bioc-3.20 [amd64]
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-biocgenerics (>= 0.22.0)
- generic functions for Bioconductor
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- dep: r-bioc-biostrings (>= 2.42.1)
- GNU R string objects representing biological sequences
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- dep: r-bioc-iranges (>= 2.6.0)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-shortread (>= 1.32.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- dep: r-bioc-xvector (>= 0.16.0)
- BioConductor representation and manpulation of external sequences
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- dep: r-cran-ggplot2 (>= 2.1.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-rcppparallel (>= 4.3.0)
- parallel programming tools for Rcpp
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- dep: r-cran-reshape2 (>= 1.4.1)
- Flexibly reshape data: a reboot of the reshape package
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
Imuroi r-bioc-dada2
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| amd64 | 1.34.0+dfsg-2 | 2,746.2 kt | 3,153.0 kt | [tiedostoluettelo] |
| x32 (epävirallinen siirros) | 1.26.0+dfsg-1 | 2,721.0 kt | 3,079.0 kt | [tiedostoluettelo] |