[ Source: r-bioc-genomicranges ]
Paketti: r-bioc-genomicranges (1.56.1+dfsg-1)
Links for r-bioc-genomicranges
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-genomicranges:
- [r-bioc-genomicranges_1.56.1+dfsg-1.dsc]
- [r-bioc-genomicranges_1.56.1+dfsg.orig.tar.xz]
- [r-bioc-genomicranges_1.56.1+dfsg-1.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
BioConductor representation and manipulation of genomic intervals
The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.
Muut pakettiin r-bioc-genomicranges liittyvät paketit
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- dep: libc6 (>= 2.17)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.19
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-bioc-biocgenerics (>= 0.50.0)
- generic functions for Bioconductor
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- dep: r-bioc-genomeinfodb (>= 1.40.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-iranges (>= 2.38.1)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-s4vectors (>= 0.42.1)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-xvector (>= 0.44.0)
- BioConductor representation and manpulation of external sequences
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- sug: r-bioc-annotate (>= 1.82.0)
- BioConductor annotation for microarrays
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- sug: r-bioc-annotationdbi (>= 1.66.0)
- GNU R Annotation Database Interface for BioConductor
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- sug: r-bioc-annotationhub (>= 3.12.0)
- GNU R client to access AnnotationHub resources
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- sug: r-bioc-biobase (>= 2.64.0)
- base functions for Bioconductor
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- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-biostrings (>= 2.72.1)
- GNU R string objects representing biological sequences
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- sug: r-bioc-bsgenome (>= 1.72.0)
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2 (>= 1.44.0)
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-dexseq (>= 1.50.0)
- GNU R inference of differential exon usage in RNA-Seq
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- sug: r-bioc-edger (>= 4.2.0)
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicalignments (>= 1.40.0)
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-genomicfeatures (>= 1.56.0)
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-gviz (>= 1.48.0)
- Plotting data and annotation information along genomic coordinates
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- sug: r-bioc-keggrest (>= 1.44.1)
- GNU R client-side REST access to KEGG
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- sug: r-bioc-rsamtools (>= 2.20.0)
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- sug: r-bioc-rtracklayer (>= 1.64.0)
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
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- sug: r-bioc-variantannotation (>= 1.50.0)
- BioConductor annotation of genetic variants
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- sug: r-cran-digest
- GNU R package for 'hash digest' of R data structures
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-runit
- GNU R package providing unit testing framework
Imuroi r-bioc-genomicranges
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| ppc64el | 1,799.0 kt | 2,820.0 kt | [tiedostoluettelo] |