Paketti: libseqlib-dev (1.2.0+dfsg-11 ja muut)
Links for libseqlib-dev
Debian-palvelut:
Imuroi lähdekoodipaketti libseqlib:
- [libseqlib_1.2.0+dfsg-11.dsc]
- [libseqlib_1.2.0+dfsg.orig.tar.xz]
- [libseqlib_1.2.0+dfsg-11.debian.tar.xz]
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Étienne Mollier (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.
This package contains the header files and static library.
Muut pakettiin libseqlib-dev liittyvät paketit
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- dep: libbwa-dev
- Burrows-Wheeler Aligner source files
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- dep: libfml-dev
- development headers for libfml
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- dep: libhts-dev
- development files for the HTSlib
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- dep: libjsoncpp-dev
- library for reading and writing JSON for C++ (devel files)
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- dep: libseqlib2 (= 1.2.0+dfsg-11+b1)
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data
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- dep: libssw-dev
- Development headers and static libraries for libssw
myös näennäispaketti, jonka toteuttaa libssw-dev
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- dep: zlib1g-dev
- compression library - development
Imuroi libseqlib-dev
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| amd64 | 1.2.0+dfsg-11+b1 | 216.1 kt | 1,197.0 kt | [tiedostoluettelo] |
| arm64 | 1.2.0+dfsg-11+b1 | 203.1 kt | 1,207.0 kt | [tiedostoluettelo] |
| armel | 1.2.0+dfsg-11+b1 | 204.1 kt | 1,108.0 kt | [tiedostoluettelo] |
| armhf | 1.2.0+dfsg-11+b1 | 205.6 kt | 1,005.0 kt | [tiedostoluettelo] |
| i386 | 1.2.0+dfsg-11+b1 | 228.3 kt | 1,031.0 kt | [tiedostoluettelo] |
| mips64el | 1.2.0+dfsg-11+b1 | 224.8 kt | 1,431.0 kt | [tiedostoluettelo] |
| ppc64el | 1.2.0+dfsg-11+b1 | 222.5 kt | 1,301.0 kt | [tiedostoluettelo] |
| s390x | 1.2.0+dfsg-11+b1 | 208.1 kt | 1,208.0 kt | [tiedostoluettelo] |