[ Source: ragout ]
Paketti: ragout (2.3-5)
Links for ragout
Debian-palvelut:
Imuroi lähdekoodipaketti ragout:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
Reference-Assisted Genome Ordering UTility
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).
The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.
Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.
Muut pakettiin ragout liittyvät paketit
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- dep: libc6 (>= 2.34)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libstdc++6 (>= 13.1)
- GNU standardi C++ -kirjasto, versio 3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-six
- Python 2 and 3 compatibility library
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- rec: sibelia
- comparative genomics tool
Imuroi ragout
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| ppc64el | 2,077.4 kt | 9,791.0 kt | [tiedostoluettelo] |