Paketti: maffilter (1.3.1+dfsg-1 ja muut)

Links for maffilter

Debian-palvelut:

Imuroi lähdekoodipaketti maffilter:

Ylläpitäjät:

External Resources:

Kotisivu [jydu.github.io]

Samankaltaisia paketteja:

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Muut pakettiin maffilter liittyvät paketit

depends

recommends

suggests

enhances

dep: libboost-iostreams1.67.0

Boost.Iostreams -kirjasto
dep: libboost-regex1.67.0 (>= 1.67.0-10)

regular expression library for C++
dep: libbpp-core4 [ei amd64]

Bio++ Core library

dep: libbpp-core4 (>= 2.4.1) [amd64]
dep: libbpp-phyl-omics3 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12 [ei amd64]

Bio++ Phylogenetic library

dep: libbpp-phyl12 (>= 2.4.1) [amd64]
dep: libbpp-seq-omics3 [ei amd64]

Bio++ Sequence library: genomics components

dep: libbpp-seq-omics3 (>= 2.4.1) [amd64]
dep: libbpp-seq12 [ei amd64]

Bio++ Sequence library

dep: libbpp-seq12 (>= 2.4.1) [amd64]
dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.1.3) [i386]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.17) [arm64]

dep: libc6 (>= 2.4) [armhf]
dep: libgcc1 (>= 1:3.0) [ei armhf]

GCC:n apukirjasto

dep: libgcc1 (>= 1:3.5) [armhf]
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

Imuroi maffilter

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.3.1+dfsg-1+b1	210.3 kt	847.0 kt	[tiedostoluettelo]
arm64	1.3.1+dfsg-1+b1	189.9 kt	795.0 kt	[tiedostoluettelo]
armhf	1.3.1+dfsg-1+b1	179.7 kt	554.0 kt	[tiedostoluettelo]
i386	1.3.1+dfsg-1+b1	213.4 kt	806.0 kt	[tiedostoluettelo]