Paketti: gubbins (2.4.1-4)

Links for gubbins

Debian-palvelut:

Imuroi lähdekoodipaketti gubbins:

Ylläpitäjät:

External Resources:

Kotisivu [sanger-pathogens.github.io]

Samankaltaisia paketteja:

phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

Muut pakettiin gubbins liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)
dep: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
dep: zlib1g (>= 1:1.1.4)

pakkauskirjaston ajonaikaistiedostot

rec: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
rec: iqtree

efficient phylogenetic software by maximum likelihood

Imuroi gubbins

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	56.9 kt	239.0 kt	[tiedostoluettelo]
i386	58.0 kt	238.0 kt	[tiedostoluettelo]