Paketti: r-cran-alakazam (1.1.0-1 ja muut)

Links for r-cran-alakazam

Debian-palvelut:

Imuroi lähdekoodipaketti r-cran-alakazam:

Ylläpitäjät:

External Resources:

Kotisivu [cran.r-project.org]

Samankaltaisia paketteja:

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Muut pakettiin r-cran-alakazam liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]
dep: libgcc-s1 (>= 3.0) [ei armel, armhf]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libstdc++6 (>= 5.2)

GNU standardi C++ -kirjasto, versio 3
dep: r-api-4.0

näennäispaketti, jonka toteuttaa r-base-core
dep: r-base-core (>= 4.0.4-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biostrings

GNU R string objects representing biological sequences
dep: r-bioc-genomicalignments

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-iranges

GNU R low-level containers for storing sets of integer ranges
dep: r-cran-airr

GNU R AIRR data representation reference library
dep: r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution
dep: r-cran-dplyr (>= 1.0)

GNU R grammar of data manipulation
dep: r-cran-ggplot2 (>= 3.2.0)

implementation of the Grammar of Graphics
dep: r-cran-igraph (>= 1.0.0)

GNU R network analysis and visualization
dep: r-cran-lazyeval

GNU R lazy (non-standard) evaluation
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-progress

GNU R terminal progress bars
dep: r-cran-rcpp (>= 0.12.12)

GNU R package for Seamless R and C++ Integration
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rlang

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-scales

Scale functions for visualization
dep: r-cran-seqinr

GNU R biological sequences retrieval and analysis
dep: r-cran-stringi

GNU R character string processing facilities
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr (>= 1.0.0)

GNU R package to easily tidy data

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Imuroi r-cran-alakazam

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.1.0-1+b1	2,484.2 kt	2,940.0 kt	[tiedostoluettelo]
arm64	1.1.0-1	2,479.4 kt	2,931.0 kt	[tiedostoluettelo]
armel	1.1.0-1	2,480.7 kt	2,926.0 kt	[tiedostoluettelo]
armhf	1.1.0-1	2,480.1 kt	2,902.0 kt	[tiedostoluettelo]
i386	1.1.0-1	2,486.4 kt	2,942.0 kt	[tiedostoluettelo]
mips64el	1.1.0-1	2,479.4 kt	2,953.0 kt	[tiedostoluettelo]
mipsel	1.1.0-1	2,478.6 kt	2,946.0 kt	[tiedostoluettelo]
ppc64el	1.1.0-1	2,484.4 kt	2,959.0 kt	[tiedostoluettelo]
s390x	1.1.0-1	2,479.6 kt	2,939.0 kt	[tiedostoluettelo]